GgaEX1001312 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8689429-8691290:-
Coord C1 exon
chr12:8691165-8691290
Coord A exon
chr12:8690250-8690384
Coord C2 exon
chr12:8689429-8689622
Length
135 bp
Sequences
Splice sites
3' ss Seq
AACAATCAACTGTTTTGTAGCTG
3' ss Score
5.55
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGTGCTCTTGGCAAATGGAATACTTCTTAGATATTTATTTATTTTCTCCTGAGGATATTGCACTGAATGCAGCAGTTCTTCTATGGCCAAAGAAGATTAACCCTATTTTTGATGAGCATGATGAT
Seq A exon
CTGATTGAAAAGTCCAAACGTAAAGGAGAACAAGAACTAATTTATAAATCTGAGAAACTGACAGTGGAATTAGGGAAGCTAACACAGTCTGTGACAGAACTTGAAGAATACTCAGAACTGGATTGCATGCAACAG
Seq C2 exon
TATGTAGCTGACCTGAGAGCCTTACAGAAACGCATACAGGAAGCTGATGAAACAGTAGCTTTTATTAATAAAGAAGAGACTCTGATGGAATGGAAGTTAAGTCACTTCCCACTTCTCAGCAGCTTAAAAAATGAGATTGAACCATATCAGAAACTCTTTCATCTCATACTGAAATGGCAGCGAACTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(6.8=43.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTTCTTCTATGGCCA
R:
TCAGTTCGCTGCCATTTCAGT
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]