GgaEX1001312 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8937461-8939322:-
Coord C1 exon
chr12:8939197-8939322
Coord A exon
chr12:8938282-8938416
Coord C2 exon
chr12:8937461-8937654
Length
135 bp
Sequences
Splice sites
3' ss Seq
AACAATCAACTGTTTTGTAGCTG
3' ss Score
5.55
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGTGCTCTTGGCAAATGGAATACTTCTTAGATATTTATTTATTTTCTCCTGAGGATATTGCACTGAATGCAGCAGTTCTTCTATGGCCAAAGAAGATTAACCCTATTTTTGATGAGCATGATGAT
Seq A exon
CTGATTGAAAAGTCCAAACGTAAAGGAGAACAAGAACTAATTTATAAATCTGAGAAACTGACAGTGGAATTAGGGAAGCTAACACAGTCTGTGACAGAACTTGAAGAATACTCAGAACTGGATTGCATGCAACAG
Seq C2 exon
TATGTAGCTGACCTGAGAGCCTTACAGAAACGCATACAGGAAGCTGATGAAACAGTAGCTTTTATTAATAAAGAAGAGACTCTGATGGAATGGAAGTTAAGTCACTTCCCACTTCTCAGCAGCTTAAAAAATGAGATTGAACCATATCAGAAACTCTTTCATCTCATACTGAAATGGCAGCGAACTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'12-15,'12-14,13-15=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(6.8=43.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTTCTTCTATGGCCA
R:
TCAGTTCGCTGCCATTTCAGT
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]