DreEX6079808 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19622309-19624152:-
Coord C1 exon
chr23:19624027-19624152
Coord A exon
chr23:19623807-19623941
Coord C2 exon
chr23:19622309-19622502
Length
135 bp
Sequences
Splice sites
3' ss Seq
TACACACTCTGTTGCAATAGGTG
3' ss Score
7.17
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GAAGCACAACAAAGGATGAATTATTTGATGGATGTCCATATTTTTAATGAGGAGCACCTTGATCTGAACACCACAGTACTGCTCTGGCCACAAAACATAAACCCGATCTTCGATCAAAGTGATGAG
Seq A exon
GTGATGGATGAAGCCAAGCTAAAGGGTCAAAATGATCTTTCTGGTCGAAGAGAAAAGCTGCTGCTGGAACTCGACAAAGTAGGCCGCAGGATGGAGGAATTTGCTGAGTGCTCTGAACTCGATATGATTCAACAG
Seq C2 exon
TATGCCGCTGATGTGAGAACAGTTCTGAAAAGACTTCAGGATATTGAAGAATCAATAGACTTTATCAACAAAGAAGAAGCCCTGTACCAATGGGAGAAAACCTCATACCCAGAGGTGGAGGTGATCAAGGAAAGCATTGAGCCTTATCAGAAGCTCTTCACCTTGGTTCTGAAATGGCAACGTACAAGAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(6.3=43.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTGATCTGAACACCACA
R:
CGTTGCCATTTCAGAACCAAGG
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]