BtaEX0001470 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N3V2]
Coordinates
chr1:148566714-148570710:+
Coord C1 exon
chr1:148566714-148566823
Coord A exon
chr1:148568529-148568607
Coord C2 exon
chr1:148570530-148570710
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCCCCCGCTGCCCAGGAA
3' ss Score
7.84
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGGCTGTGATGGTGAGAGTATTAGAAATTGCCCATTTTCTTAGCGTCTCTTTATGATTCTCTGGCTAAAGGGCATTATATTTAATGTGACAACAGGGGACTTGAAAAG
Seq A exon
GAAGCCCACGGACCTGCAGAACTTGGCTCCTGGCACCAACCCACCTTTCATGACTCTTGATGGTAAAGTCAAGACAGAC
Seq C2 exon
TTTATGAAAGGAACCTGTTAAAGGCCTGAAGAAGCTGGATAGCTATCTGAACAGCCCCCTGCCGGATGAGGTAGATGCCCACAGCACCGAGGAAGCTGCTGTTTCTGGAAGGAAGTTCCTGGATGGCAATGAGCTCACGCTGGCTGACTGCAATCTCTTACCCAAGCTCCACATTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046447_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.158
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134101=GST_C_2=FE(68.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACAACAGGGGACTTGAA
R:
AAGAGATTGCAGTCAGCCAGC
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development