BtaEX0001671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96304987-96307697:-
Coord C1 exon
chr8:96307477-96307697
Coord A exon
chr8:96306041-96306113
Coord C2 exon
chr8:96304987-96305189
Length
73 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTCTTTGCCATCAGGAG
3' ss Score
9.29
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCCGCACCATTATCCTCTCCACACACCACATGGACGAGGCAGACATCCTGGGGGACAGGATCGCCATCATTTCCCATGGGAAGCTCTGCTGCGTGGGCTCCTCCCTGTTCCTGAAGAACCAGCTGGGGACAGGCTACTACCTGACCCTGGTCAAGAAGGACGTGGAGTCTTCCCTCAGCTCATGCAGAAATAGCAGTAGCACTGTGTCATACCTGAAAAAG
Seq A exon
GAGGACAGTGTTTCTCAGAGCAGTTCTGATGCTGGCCTGGGCAGCGACCATGAAAGTGACATGCTGACCATCG
Seq C2 exon
ATGTCTCTGTGATCTCCAACCTCATCAGGAAGCATGTGGCTGAGGCCCGGCTGGTGGAAGACATTGGGCATGAGCTGACCTACGTGCTGCCCTACGAGGCTGCCAGAGAGGGAGCCTTTGTGGAACTCTTCCATGAAATTGATGACCGGCTCTCAGACCTAGGCATCTCCAGTTACGGCATCTCAGAGACTACTCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'30-33,'30-31,31-33
Average complexity
ME(31_31-32_32[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCTCAGCTCATGCAGA
R:
AGTTCCACAAAGGCTCCCTCT
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development