RnoEX0004754 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69894315-69896991:-
Coord C1 exon
chr5:69896771-69896991
Coord A exon
chr5:69895420-69895492
Coord C2 exon
chr5:69894315-69894517
Length
73 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTCTTTGTCATCAGGAG
3' ss Score
9.55
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCCGCACCATTATTTTGTCTACACACCACATGGATGAAGCAGACATCCTAGGGGACAGAATTGCCATCATTTCCCATGGGAAGCTGTGTTGTGTGGGCTCCTCCCTGTTTTTGAAAAACCAGTTGGGAACGGGTTACTACCTGACCCTGGTCAAGAAAGATGTGGAATCGTCCCTCAGTTCCTGCAGAAACAGTAGCAGTACTGTGTCTTGTCTGAAAAAG
Seq A exon
GAGGACAGTGTTTCTCAGAGCAGTTCTGATGCTGGCCTGGGCAGCGACCATGAAAGTGACACGCTGACCATCG
Seq C2 exon
ATGTCTCTGCTATCTCCAACCTCATCAGGAAACATGTGTCCGAAGCCCGGCTGGTGGAGGACATTGGGCACGAACTGACCTATGTGCTGCCGTACGAAGCTGCTAAGGAGGGAGCCTTTGTGGAGCTCTTCCACGAGATTGATGACCGCCTCTCAGACCTGGGCATCTCCAGTTACGGCATCTCAGAGACCACCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.280 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000024564fB295
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGTCCCTCAGTTCCTGC
R:
ACAAAGGCTCCCTCCTTAGCA
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]