DreEX0009873 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51971071-51973196:+
Coord C1 exon
chr1:51971071-51971303
Coord A exon
chr1:51972071-51972143
Coord C2 exon
chr1:51972994-51973196
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTGTTTTTGTAGGAT
3' ss Score
10.61
5' ss Seq
TCGGTATGA
5' ss Score
7.72
Exon sequences
Seq C1 exon
GTCGCACCATCATCCTGTCCACACACCACATGGATGAAGCCGATATACTGGGCGACCGCATCGCCATCATCTCTCATGGCAAGCTGTGCTGCGTGGGCTCCTCTCTGTTCCTCAAGACTCAGCTGGGCACGGGTTACTACCTGACGCTGGTCAAGAAAGACTTCGATCTGTCCGCCAGCTCCTGCCGCACCTCCAGCAGCACGGTCTCCTACTCCAAGGGAAGCCTCAAGAAG
Seq A exon
GATGACAGCGTATCTGAGAGCAGTTCTGATGCCGGACTGGGCAGCGACCATGAAAGCGAAACCACCACCATCG
Seq C2 exon
ACATCTCCTTGATCTCCAATGTGATCTTCAAGCACGTTCCTACAGCCAGACTGGTGGAGGATCTCGGCCACGAAATCACGTACGTTCTGCCATATGAATCTGCCAAAGATGGAGCATTCGTGGAGCTTTTCCACGAGATCGACGACCGGCTCACAGACCTCAGCATCTCCAGCTACGGCATCTCGGACACCACTCTCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'25-25,'25-24,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCCAAGGGAAGCCTCA
R:
CGTCGATCTCGTGGAAAAGCT
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]