DreEX6056965 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6181941-6182936:+
Coord C1 exon
chr14:6181941-6182161
Coord A exon
chr14:6182243-6182318
Coord C2 exon
chr14:6182698-6182936
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGATTGGTTTTCTAGGAT
3' ss Score
8.78
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTCGTACAATACTTCTTTCTACCCATCATATGGATGAAGCAGACATTCTGGGTGATCGAATTGCTATCATCTCCCATGGAAAGCTTTGCTGTGTGGGCTCCTCGCTGTTTCTTAAGACTCAACTGGGCACCGGATACTATCTTACATTAGTGAAGAAGAACACTGAGCCTTCTCTCAGTTCTTGCAGGAACTCAAGTAGCACTGTGTCATTTGTTAAGAAA
Seq A exon
GATGATAATGCATCTGAGAGCAGTTCGGATGCTGGTCTAGGTAGCGACCAAGAGAGCGAAGCAGCCACAGCAATCG
Seq C2 exon
GAACTTCTTGGCCCGAATCTCCTGTTGTGCCAGTTGATGTAACCATCATTTCCAGGCTAATCCTAAAGCATGTTCCTGCTGCCCGCATGGTGGAAGACCAAGGCCACGAGATCACATATGTGTTGCCATATGAGTCTGCTAAAAACGGTGCTTTTGTTGAGCTCTTCCATGACCTAGATGATCGGCTTGCAGACCTTGGCATTTCCAGCTATGGTGTCTCAGATACTACACTTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'27-31,'27-29,28-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.410 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGGAAAGCTTTGCTGT
R:
AGGAGATTCGGGCCAAGAAGT
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]