RnoEX0004755 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69894315-69896991:-
Coord C1 exon
chr5:69896771-69896991
Coord A exon
chr5:69895314-69895392
Coord C2 exon
chr5:69894315-69894517
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCTGGGGTTTCTTATTCAGGTG
3' ss Score
9.59
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCCGCACCATTATTTTGTCTACACACCACATGGATGAAGCAGACATCCTAGGGGACAGAATTGCCATCATTTCCCATGGGAAGCTGTGTTGTGTGGGCTCCTCCCTGTTTTTGAAAAACCAGTTGGGAACGGGTTACTACCTGACCCTGGTCAAGAAAGATGTGGAATCGTCCCTCAGTTCCTGCAGAAACAGTAGCAGTACTGTGTCTTGTCTGAAAAAG
Seq A exon
GTGGTGCCTGAGCTCCCCGCAGCTGGGCAGAGTGGAGGCAGAGGAGGAGAGGTGCAGAGGCTGGTGGCGCTGACTCAAG
Seq C2 exon
ATGTCTCTGCTATCTCCAACCTCATCAGGAAACATGTGTCCGAAGCCCGGCTGGTGGAGGACATTGGGCACGAACTGACCTATGTGCTGCCGTACGAAGCTGCTAAGGAGGGAGCCTTTGTGGAGCTCTTCCACGAGATTGATGACCGCCTCTCAGACCTGGGCATCTCCAGTTACGGCATCTCAGAGACCACCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGTCCCTCAGTTCCTGC
R:
ACAAAGGCTCCCTCCTTAGCA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]