MmuEX0002936 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53084695-53087312:-
Coord C1 exon
chr4:53087092-53087312
Coord A exon
chr4:53085664-53085742
Coord C2 exon
chr4:53084695-53084897
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCTGGGGTTTCTTATTCAGGTG
3' ss Score
9.59
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCCGCACCATTATTTTGTCTACACACCACATGGACGAAGCTGACATCCTTGGGGACAGAATTGCCATCATTTCCCATGGGAAGCTGTGTTGTGTGGGCTCCTCCCTGTTTTTGAAAAACCAGTTGGGAACGGGTTACTATCTGACCCTGGTTAAGAAAGATGTGGAATCGTCCCTCAGTTCCTGCAGAAACAGTAGCAGCACCGTGTCTTGTCTGAAAAAG
Seq A exon
GTGGTGCCTGGGCTCCCCGCAGCTGGGCAGAGTGGAGGCAGAGGAGGAGAGGTGCAGAGGCTGGTGGCGCTGACTCAAG
Seq C2 exon
ATGTCTCTGCTATCTCCAACCTCATCAGGAAGCACGTGTCTGAAGCCCGGCTGGTGGAGGACATTGGGCACGAGCTGACCTATGTGCTGCCGTACGAAGCCGCGAAGGAGGGAGCCTTTGTGGAACTCTTCCATGAGATTGATGACCGGCTCTCAGACCTGGGCATCTCCAGTTATGGCATCTCGGAGACCACCCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'24-25,'24-24,26-25
Average complexity
ME(23_25-24_26[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGAAACAGTAGCAGCA
R:
AGAGTTCCACAAAGGCTCCCT
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: