BtaEX0001672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96304987-96307697:-
Coord C1 exon
chr8:96307477-96307697
Coord A exon
chr8:96305935-96306013
Coord C2 exon
chr8:96304987-96305189
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTCTGGGGTTTCTTATTCAGGTG
3' ss Score
9.82
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCCGCACCATTATCCTCTCCACACACCACATGGACGAGGCAGACATCCTGGGGGACAGGATCGCCATCATTTCCCATGGGAAGCTCTGCTGCGTGGGCTCCTCCCTGTTCCTGAAGAACCAGCTGGGGACAGGCTACTACCTGACCCTGGTCAAGAAGGACGTGGAGTCTTCCCTCAGCTCATGCAGAAATAGCAGTAGCACTGTGTCATACCTGAAAAAG
Seq A exon
GTGGTGTCTGAGCTTCCCCCAGCTGGGCAGAGTGGAGGCACAGGAGGAGAGGTGCAGAGGCTGGTGGCGCTGACTCAAG
Seq C2 exon
ATGTCTCTGTGATCTCCAACCTCATCAGGAAGCATGTGGCTGAGGCCCGGCTGGTGGAAGACATTGGGCATGAGCTGACCTACGTGCTGCCCTACGAGGCTGCCAGAGAGGGAGCCTTTGTGGAACTCTTCCATGAAATTGATGACCGGCTCTCAGACCTAGGCATCTCCAGTTACGGCATCTCAGAGACTACTCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'30-33,'30-32,32-33
Average complexity
ME(31_31-32_32[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCTCAGCTCATGCAGA
R:
AGTTCCACAAAGGCTCCCTCT
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development