BtaEX0001673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96366349-96387333:-
Coord C1 exon
chr8:96387170-96387333
Coord A exon
chr8:96373264-96373357
Coord C2 exon
chr8:96366349-96366490
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGTTTCCTACTCAGTGT
3' ss Score
8.13
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
TTAATGACCAGCCACAGCGTCCCTGCTGTGAGCTCCAGCCACTTCCTTCCCGGGCTCCCGAGCCTCACGCAGGCTGCTGTGGTGCTGGCTGAGGTAACATGGCTTACTGGCCTCAGCTGAGATTGCTGCTGTGGAAGAACCTCACTTTCAGAAGAAGACAAACA
Seq A exon
TGTCAACTGTTTCTTGAAGTGGCCTGGCCTCTATTCATCTTCCTGATCCTGATCTCCGTGCGGCTGAGCTATCCACCCTATGAACAACATGAAT
Seq C2 exon
GCCACTTTCCAAACAAAGCCATGCCTTCTGCAGGAACACTTCCTTGGGTTCAGGGGATTATCTGTAACGCCAATAACCCCTGTTTCCGTTATCCAACTCCTGGTGAGGCTCCGGGAGTTGTTGGAAACTTTAACAAGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'4-5,'4-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGCTGAGGTAACATGG
R:
GGAAACAGGGGTTATTGGCGT
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development