RnoEX6021832 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69952345-69966907:-
Coord C1 exon
chr5:69966742-69966907
Coord A exon
chr5:69956054-69956147
Coord C2 exon
chr5:69952345-69952486
Length
94 bp
Sequences
Splice sites
3' ss Seq
TATTGTGTCTTATTTTCTAGTGT
3' ss Score
9.41
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
TTAATGACCAGCCACAGTGTCACAGCTCCGTGCTCTGGCTGCTTCCTCCAGGGCTCTCAAGCCACACACACAGATCACTGTGGGTGCTGGCAGAGGTAACATGGCTTGTTGGTCTCAGTTAAGGTTGCTGCTGTGGAAGAATCTGACATTTCGAAGAAGACAAACA
Seq A exon
TGTCAGCTGTTACTGGAAGTGGCCTGGCCTCTCTTTATCTTCCTGATCCTGATTTCTGTCCGCCTGAGCTACCCACCCTATGAACAACATGAGT
Seq C2 exon
GTCACTTTCCAAATAAAGCCATGCCTTCTGCAGGAACCCTTCCCTGGGTCCAGGGGATTATCTGTAATGCCAATAACCCTTGCTTCCGTTATCCAACTCCAGGCGAGGCTCCCGGTGTTGTTGGAAACTTTAACAAGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGCAGAGGTAACATGG
R:
CGGAAGCAAGGGTTATTGGCA
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]