DreEX0009874 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51928520-51933869:+
Coord C1 exon
chr1:51928520-51928625
Coord A exon
chr1:51930612-51930705
Coord C2 exon
chr1:51933728-51933869
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTTTCTGTTTCAGATT
3' ss Score
13.63
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
CTTCTGTAAGGCGGCACGGATAGTGTGTATCCGTGGTAAGATGGCTGTCTCCACTCAGTTGGGTTTACTGTTGTGGAAGAACTTCACCTACAGACGGAGACAGACT
Seq A exon
ATTCAGCTGCTGGTCGAGATCATATGGCCACTTTTCATCTTTTTCATCTTGATATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAAT
Seq C2 exon
GCCATTTTCCCAATAAGGCTATGCCCTCTGCAGGGACTTTACCGTGGGTTCAGGGCATCATCTGCAATGCCAACAACCCCTGCTTTCGCTACCCGACTCCAGGAGAGACGCCCGGGGTTGTGGGCAACTTCAATGACTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCTGTCTCCACTCAGT
R:
GTCTCTCCTGGAGTCGGGTAG
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]