BtaEX0001684 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7229282-7237272:-
Coord C1 exon
chr4:7237095-7237272
Coord A exon
chr4:7234541-7234656
Coord C2 exon
chr4:7229282-7229438
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTTCATTTCTCAGCTC
3' ss Score
9.61
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CCTGGAGAGCATCCGCCAGTGCGGTGTCGCCCTGTGCATCGTGCTTGGCTTCTCCATCCTCTCTGCGTCCATCGGCAGCTCCGTGGTGCAGGACAGGGTGACCGGGGCCAAGAGGCTGCAGCACGTGAGCGGCCTGGGCTACAGGACCTACTGGCTCACACACTTCCTGTTTGACATG
Seq A exon
CTCCTTTACTTGGTCTCCGTCTGCCTGTGTGTCTCTGTGATCATGGCCTTCCAGCTAACCGCCTTCACTTTCCGGGAGAACCTGGCGGCCACGGCCCTGCTGCTGGTACTTTTCGG
Seq C2 exon
GTATGCCACTCTTCCCTGGATGTATCTCGTCTCAAGGATCTTCTCCAGCTCGGACGTCGCTTTCATCTCCTACATCTCCTTGAACTTCATCTTTGGCCTCTGTACCATGCTGATGACGGTCATGCCCCGGCTGCTGGCCATCGTCTCCAAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'61-61,'61-60,62-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
PF126982=ABC2_membrane_3=FE(12.3=100)
C2:
PF126982=ABC2_membrane_3=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCATCCTCTCTGCGTCC
R:
CATGACCGTCATCAGCATGGT
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development