GgaEX6020689 @ galGal4
Exon Skipping
Gene
ENSGALG00000013079 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr2:80045863-80051573:+
Coord C1 exon
chr2:80045863-80046021
Coord A exon
chr2:80049927-80050042
Coord C2 exon
chr2:80051417-80051573
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTATTTCTAGCTG
3' ss Score
9.67
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGTGGGGTAGCACTCTGTATCATGCTGGGTTTCTCCATCCTCACTGCATCCATTGGCAGTGCCATAGTGAAAGACAGAGTATCTGGTACAAAACGGTTGCAACACATCACTGGCCTGGGTTACAAAACATACTGGCTTGCTAATTTCTGCTGTGATATG
Seq A exon
CTGTTTTATATGCTTCCCGTCACCCTGTGTGTTGGTGTTATTACTGCCTTCCAGCTATCAGCCTTCACTTTCCGAAATAATTTGGCAGCCACTGTTATCCTGCTGGTTCTCTTTGG
Seq C2 exon
ATATGCAACTCTACCGTGGATGTATCTTATATCCAGATTCTTCTCAAGTTCAGATGTAGCTTTTATTTCTTACATCTCCTTAAACTTTGTCTTTGGCCTTTGTACCATGCTGGTGACTCTTCTACCTCGTTTGCTAGCTATAATTTCCAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'43-45,'43-44,44-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.5=100)
A:
PF126982=ABC2_membrane_3=FE(11.3=100)
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGCATCCATTGGCAGT
R:
CGAGGTAGAAGAGTCACCAGC
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]