MmuEX6084006 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9567668-9577307:+
Coord C1 exon
chr11:9567668-9567845
Coord A exon
chr11:9570545-9570660
Coord C2 exon
chr11:9577151-9577307
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCTTTGTTTTCCCAGCTC
3' ss Score
8.28
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CCTGGAGAGCATCCGCCAGTGTGGTGTTGCCCTCTGCATTGTCCTGGGATTCTCCATCTTATCAGCATCGATTGGTAGCTCTGTGGTGAGGGACAGAGTGACTGGAGCTAAAAGACTGCAACATATAAGTGGCCTTGGACACAGGACATACTGGCTAATTAACTTCCTGTATGACATG
Seq A exon
CTCTTTTACTTAGTTTCTGTCTGCCTGTGTGTCGCTGTTATAGGAGCCTTCCAGTTAACAGCTTTCACATTTCGGGAGAACTTGGCGGCCACAGCCCTCCTGCTAGCACTTTTCGG
Seq C2 exon
ATACGCAATGATTCCATGGATGTATCTGATGTCCAGAATCTTCTCCAGTTCAGATGTGGCCTTCATCTCCTACATCTCCTTGAACTTCATCTTTGGCTTGTGCACCATGTTGATGACCACCATGCCCCGGCTCTTGGCCATCATTTCCAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.9=100)
A:
PF126982=ABC2_membrane_3=FE(12.2=100)
C2:
PF126982=ABC2_membrane_3=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGTCCTGGGATTCTCCA
R:
ACATGGTGCACAAGCCAAAGA
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types