GgaEX6020689 @ galGal3
Exon Skipping
Gene
ENSGALG00000013079 | F1NT47_CHICK
Description
NA
Coordinates
chr2:82367721-82373450:+
Coord C1 exon
chr2:82367721-82367898
Coord A exon
chr2:82371804-82371919
Coord C2 exon
chr2:82373294-82373450
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTGTATTTCTAGCTG
3' ss Score
9.67
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
AATGGAGAATGTTCGTCAGTGTGGGGTAGCACTCTGTATCATGCTGGGTTTCTCCATCCTCACTGCATCCATTGGCAGTGCCATAGTGAAAGACAGAGTATCTGGTACAAAACGGTTGCAACACATCACTGGCCTGGGTTACAAAACATACTGGCTTGCTAATTTCTGCTGTGATATG
Seq A exon
CTGTTTTATATGCTTCCCGTCACCCTGTGTGTTGGTGTTATTACTGCCTTCCAGCTATCAGCCTTCACTTTCCGAAATAATTTGGCAGCCACTGTTATCCTGCTGGTTCTCTTTGG
Seq C2 exon
ATATGCAACTCTACCGTGGATGTATCTTATATCCAGATTCTTCTCAAGTTCAGATGTAGCTTTTATTTCTTACATCTCCTTAAACTTTGTCTTTGGCCTTTGTACCATGCTGGTGACTCTTCTACCTCGTTTGCTAGCTATAATTTCCAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'36-37,'36-36,37-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.0=100)
A:
PF126982=ABC2_membrane_3=FE(8.4=100)
C2:
PF126982=ABC2_membrane_3=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGCATCCATTGGCAGT
R:
CGAGGTAGAAGAGTCACCAGC
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]