BtaEX0001698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61884376-61888913:+
Coord C1 exon
chr19:61884376-61884523
Coord A exon
chr19:61887349-61887517
Coord C2 exon
chr19:61888855-61888913
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTGTATTTTTCAGGAG
3' ss Score
11.59
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCATGCATTTAGAAGACGTTGATGAAGGTGCTTTAGTTTCTAATTTGACTGAAGGCCCGTGTCCTCTAATCATTGCTATTATGATGCTGATTCTTAACAGCATTTTCTACGCCCTCTTGGCTGTTTATCTTGATCAAGTTGTTCCAG
Seq A exon
GAGAATTTGGCTTACGGAGATCATCATTTTATTTTCTGAAGCCATCATATTGGTCAAAGAGCAAAAGGAATTATAAGGAGTTATCAGAGGGCAACGTGAATGGGAATGTTAGTTTTAGTGAAATTGTTGAGCCTGTTTCTTCAGAATTTATAGGAAAAGAAGCCATCAG
Seq C2 exon
AATCAGTGGTATTCAGAAGACCCACAGAAAGAAAGGTGAAAATGTAGAGGCTTTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTAGAAGACGTTGATGAAGG
R:
TCTCAAAGCCTCTACATTTTCACCT
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development