GgaEX6016378 @ galGal4
Exon Skipping
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8246847-8248931:-
Coord C1 exon
chr18:8248784-8248931
Coord A exon
chr18:8248314-8248482
Coord C2 exon
chr18:8246847-8246905
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCTTTATTACTCAGGGG
3' ss Score
9.02
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGATGCATTTAGAAGATTATGAAGACGGAGCAACGTTTTCCAATCTAAATCACGGTCCTTACCCACTCTTTATCTCCTTAATTCTACTGGTGCTGGACAGCATATTTTACCTGCTGGCAGCTGTCTACCTCGATCAAGTTATTCCAG
Seq A exon
GGGAGTTCGGACTGCGCCGCTCATCGTTTTTCTTTATGAAGCCCTCATTTTGGTCAAAGCGCAGGAAGAATTACGAGGAGTTGTATGAGAGCAGCATCAATGGCAACCTCAGCTGCAGTGAGATGGTCGAGCCCGTGCCATCCGAGTTCCAGGGGAAGGAAGCCATCAG
Seq C2 exon
AATCAGCTGTGTTCAGAAAACATTCAGGAAAAAAGGGGAAACTGTGGAGGCTCTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATTTAGAAGATTATGAAGACGG
R:
CTGAGAGCCTCCACAGTTTCC
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]