DreEX6070641 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38652930-38655624:+
Coord C1 exon
chr12:38652930-38653077
Coord A exon
chr12:38654054-38654231
Coord C2 exon
chr12:38655566-38655624
Length
178 bp
Sequences
Splice sites
3' ss Seq
ATGGGCATTTCTTCCTTCAGGCG
3' ss Score
8.01
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTAGTGTATCTGGAAGCTCAAGGGGATGGCGCAGTGTTCTCATCTCTGGGCAATGGTCCTCACGCTCTCTATGTTCCACTGGTCATGCTGTTTTTGGACTGCATCCTCTACCTGCTTTTAGCCATTTACCTGGACCAAGTGCTACCAG
Seq A exon
GCGAGTTTGGCACAAAACGCTCAGTGTTGTATTTTCTAAAACCATCCTATTGGTCCAAGCGGAGGAAGCGATATGTCGAGGTGAGCTCTGTGTATGAGGGCGAAGTAAACGGGACGCCTGCAATCGACGAATCGGTGGAGGCTGTTTCTCCTGAGTTCAGAGGCAAAGAGGTTATCAG
Seq C2 exon
GATTTGCAATATCCGAAAAATTTATCGGGAGAAGGATACCAAAGTGGAGGCTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'10-14,'10-11,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCTGGAAGCTCAAGGGGA
R:
CTCTTAAAGCCTCCACTTTGGT
Band lengths:
203-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]