RnoEX6050351 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98616791-98618674:-
Coord C1 exon
chr10:98618527-98618674
Coord A exon
chr10:98617473-98617641
Coord C2 exon
chr10:98616791-98616849
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATGTTCATTTTTAGGGG
3' ss Score
10.54
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCATGCATTTAGAAGATTTCAATGAAGGAGCCTTATTTTCTAGTTTGACTGAAGGCCCCTACCCGCTAATTATCACCCTTACCATGCTCGCTCTGGACAGTGTGTTCTATGCCCTGCTGGCTGTGTACCTTGATCAGGTCATCCCAG
Seq A exon
GGGAATTTGGCTTGAGGAGGTCATCTTTGTACTTCCTAAAGCCATCATATTGGTCAAAAAACAAAAGGAACTATAAGGAGCTATCAGAGGGCAACATCAATGGGAATATTAGTCTCAATGAAATTGTTGAGCCCGTTTCTTCAGAATTTATAGGAAAAGAAGCTATAAG
Seq C2 exon
AATAAGTGGTATTCAGAAAGCCTATAGGAAGAAGAATGAGACCGTGGAGGCTTTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTAGAAGATTTCAATGAAGGA
R:
TTCTCAAAGCCTCCACGGTCT
Band lengths:
203-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]