BtaEX0001705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62034754-62038741:+
Coord C1 exon
chr19:62034754-62034915
Coord A exon
chr19:62038047-62038150
Coord C2 exon
chr19:62038515-62038741
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTGTGTGATTATAGCTT
3' ss Score
6.19
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GAAGAAGAATCATTGGGGCACCAGATGAGAAATCCATGGATGAAATAATGCTAGACACTTTCTCATACAGCGTGGGAGTCATCTTTAATGACCCTTTCTCTTATAAGTTAAAATTTTATCAGAGATATTACGTTCCCATTTTGAAGGAGGATTTTTTCACAG
Seq A exon
CTTACTGCAAGCGTACACATATTCACTTTTCCTGTGCACTGGAGAAATACTGGAAAGGAGGATTCGTGCCTTTACAAGCTGCCATTAATGCTGCTATTATACAA
Seq C2 exon
GTGACAACAAATCACTATGTGATGGAGGAGTTGATGTCAGTTACTGCTGTAAATATGAAGACGCTCCCCTTTATCTTTAAGGAGAACCTTCAAAATGAGATGTTCATCTTTTACTGCTTGCTTTACTTCTCCCCACTTATATACTTCCTATCACTCAATGTTGCAAGAGAGAGAAAAAACTATAAGGATTTGATGAACTTGATGGGTCTGCAAGATTCAGCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.8=100)
A:
PF126982=ABC2_membrane_3=FE(8.7=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTCCCATTTTGAAGGAGGA
R:
GGCTGAATCTTGCAGACCCAT
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development