MmuEX6090867 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110244167-110247424:-
Coord C1 exon
chr11:110247266-110247424
Coord A exon
chr11:110245218-110245321
Coord C2 exon
chr11:110244167-110244393
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCCTTGTTTTTACAGCTC
3' ss Score
11.44
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAACAAGAATCATCGGGGTACCAAGTATAGAAGACTTGGATGAAGTTCTTCTGCACAATATACCGGACGCTTTAGGAGTCATCTTTAATGACAGTTTCTCTTACCAATTAAAAGTCCTCAGGATGTATGGAAATCCATTTTTGAAAGAGGACTTATTAG
Seq A exon
CTCATTGCTGGGATACGCATTCTCAGGCGTTCTGTTCACTTTCCAAATACTGGGAAAGAGGCTTCGTAGCTTTACAAACCGCCATTAACGCTGGGATTATAGAA
Seq C2 exon
GTCACAACAAACCACTCGGTGATGGAGGAGCTGATGTCCATCGATGGGATCAATATGAAGACATTACCTTTCATTCCTAGAGATCTTTCGGATTACGAAATTTTTATCTTGTTCTGCTTGCTTTATTTCTCCTCGTTTATATATTTTGCATCCAGCAATGTTACTAAAGAGAGAAAACAGTGTAAGGAGGTCATGAAAGTCATGGGTCTACAAGACTCTGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.6=100)
A:
PF126982=ABC2_membrane_3=FE(8.7=100)
C2:
PF126982=ABC2_membrane_3=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACAATATACCGGACGCT
R:
ACGAGGAGAAATAAAGCAAGCAGA
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types