GgaEX1004159 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7935306-7936523:-
Coord C1 exon
chr18:7936365-7936523
Coord A exon
chr18:7936109-7936209
Coord C2 exon
chr18:7935306-7935532
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCCATCCCTGCAGATA
3' ss Score
12.22
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGATAAAACTGGAGGCACTGGACACCGAGAGAGCCTTGGAGGAAGCCGGGATTTTGAATGATGAGATTATAGGAGTTGTATTTAAAAACAACTTCTCCTATCACCTCCGGTTTCCTGCTGGGAACGTGGTTTTTCCAAATGAAAACCTTGAATATATAG
Seq A exon
ATACCTGTTACAATTACTCAGGGCAGTACTGCGAGAGCCCCAAGTACTGGTACAAAGGTTTCCTGTCCCTGCAGTCCAGCATTGATGCTGCTATTATAGAG
Seq C2 exon
GTGGTGGCAAATCATTCTGTTTGGGAAGAAATGAGAACAATTACTGGTGTGCGCATGAAGTCCCGCAGTGTCATCTCCTCGATTACGTTAGAGTACAGTTATTTCATGATTACTATCGTGATGTGCTTCTCTTCATTCATGTATTTCTTATCTGTGAATGTTGTAAGAGAAAAGAAGAAGCTCAAAGTACTGATGAAGTTGATGGGGCTACACGATATGGCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.8=100)
A:
PF126982=ABC2_membrane_3=FE(8.6=100)
C2:
PF126982=ABC2_membrane_3=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAACGTGGTTTTTCCA
R:
CGTGTAGCCCCATCAACTTCA
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]