RnoEX6050272 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98288442-98292193:-
Coord C1 exon
chr10:98292032-98292193
Coord A exon
chr10:98289857-98289960
Coord C2 exon
chr10:98288442-98288668
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGTTTCTTTTGTCCACAAAGCTC
3' ss Score
4.72
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTAGAAAAGTCCTGGGACTGTTGGATGAAGAAAACATCAGGGAATTAACAGAAAGTCATCAGGAAGTAATAAGAGTCATTTTCTCTGATACGTTCTCATATCATCTGAAATTTCAATTTGGACAGAGAATCCCAAAGTCAAGGGAACATGGAGATCATGAAG
Seq A exon
CTCATTGTTTTGAGATGTATGAAGATGTTGACTGTCTGATATCAATATTCTGGAAGAAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCTGCCATTATAGAA
Seq C2 exon
ACCACGACAAACCATTCGGTGATGGAGAAACTGCTGTCAGTTTCGGGGAAATTCATGAAGATCCATCCTTTCGTCAGGCAAGAGGGGATTTTGACTGATTTCTTCATTTTCACCTGCATCGTTTCCTTCTCCCCAATCACCTATTTTGTGTCAATCAGTGTTGCAAGAGAGAGGAAAAAGATGAAGGGCTTGATGATGATGATGGGTCTTCGAGATTCAGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.8=100)
A:
PF126982=ABC2_membrane_3=FE(14.3=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100),PF0308311=MtN3_slv=PU(53.0=57.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGACTGTTGGATGAAGA
R:
AAAATCCCCTCTTGCCTGACG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]