MmuEX6090786 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109976437-109980023:-
Coord C1 exon
chr11:109979862-109980023
Coord A exon
chr11:109977770-109977873
Coord C2 exon
chr11:109976437-109976663
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGTTTCTTTTGTCCACGAAGCTC
3' ss Score
4.17
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATAAAAAAGTCTTGGGACTGTTGGATGAAGAAAATATCAAGGAATTAACAGAAAGTCATGCAGAAATAATAAGAGTCATTTTTTCTGACACATTCTCATACCATCTGAAATTCCAGTTTGATCAGAGAATCCCAACGTCGAGGGAACTCAGAGACCATAATG
Seq A exon
CTCATTGTGATGGACTGTATGAAGATGTCAACTGTCTGATAGCCATATTCTGGAAGGAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCTGCCATCATAGAA
Seq C2 exon
ACCACAACAAACCATTCAGTGATGGAGGAACTGCTATCAGTGTCAGGGAAATTCATGAAGATCCATCCTTTTGTCCGTCAAGAAGGAATTCTGACTGATTTCTTTATTTTCACCTGCATCATTTCCTTCTCCCCAATCACCTATTATGTGTCAATCAATGTTGCAAGAGAGAGGAAAAGGATGAAGGGCTTGATGATGATGATGGGCCTTCGAGATCCAGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.8=100)
A:
PF126982=ABC2_membrane_3=FE(10.7=100)
C2:
PF126982=ABC2_membrane_3=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCCAACGTCGAGGGAAC
R:
TGGATCTCGAAGGCCCATCAT
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types