BtaEX0001717 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45175470-45176038:+
Coord C1 exon
chr7:45175470-45175502
Coord A exon
chr7:45175605-45175782
Coord C2 exon
chr7:45175869-45176038
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCACTGCCCCTCAGGTA
3' ss Score
7.86
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
CCTGAAGACCAAGAAATGGGTGAATGAGGTCAG
Seq A exon
GTATGGGGGCTTCTCCCTGGAGGGCCGAGACCCAGGCCTGCCCTCGGGCTTGGAGGTGGGCCGCTCCCTGGAGGAACTGCGGGCACTGCTGAACCCCGCACCAGGCGAGGCCCTCGACCACCTCCTGAACAATCTCACAGCATGGGCTGTTGGTCTGGACACTCAAGATGGCCTCAAG
Seq C2 exon
ATCTGGTTTAACAACAAGGGCTGGCACGCCATGGTGGCCTTTGTAAACCGAGCCAACAACGCTCTCCTGCGTGCCCACCTGCCACCAGGCTCCTCCCACCATGCCCACAGCATCACCACGCTCAATCACCCCCTGAACCTCACCAAGGAGCAGTTGTCTGAGGCTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(12.3=65.0)
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAATGGGTGAATGAGGTCA
R:
AGTGCAGCCTCAGACAACTG
Band lengths:
195-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development