RnoEX0004924 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12748557-12749119:-
Coord C1 exon
chr7:12749087-12749119
Coord A exon
chr7:12748814-12748991
Coord C2 exon
chr7:12748557-12748726
Length
178 bp
Sequences
Splice sites
3' ss Seq
TACCCCAAACCATTTCCCAGATA
3' ss Score
3.83
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
CCTGAAGACCAAGAAGTGGGTGGATGAGGTCAG
Seq A exon
ATACGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCTCAGGGCGTGAGGTGGTCCGCACAGTGGCAGAGATGCGGGCACTGCTGAGCCCTCAACCTGGCAATACACTAGATCGTATCCTGAACAACCTCACTCAGTGGGCCCTTGGTCTTGACGCCCGGAACAGCCTCAAG
Seq C2 exon
ATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACGTGCCTTCCTACCATCTGGTTCAGTCCGCCATGCCCACAGCATCACTACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTGTCTGAAGCTACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(14.9=81.7)
C2:
PF126982=ABC2_membrane_3=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAGTGGGTGGATGAGG
R:
CTTCAGACAGCTGCTCCTTGG
Band lengths:
188-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]