GgaEX1005412 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2826690-2827077:-
Coord C1 exon
chr28:2827045-2827077
Coord A exon
chr28:2826849-2826954
Coord C2 exon
chr28:2826690-2826764
Length
106 bp
Sequences
Splice sites
3' ss Seq
CAGCTCTCTTGCACATCCAGGTA
3' ss Score
6.79
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTCAAAAGCAAGAAGTGGGTGAACGAGCAGAG
Seq A exon
GTACGGTGGCTTCTCCCTGGGCGCTGGTGGCTCTCAGCTCCTGCCATCAGCAGAGGAGGTGAGCAGTGCAGTGCAGGAGCTGAGAGAGCTCTTCAACGTCACCCAG
Seq C2 exon
GGCAGCCCCATGGATCGGTTCCTGGGCAACCTGAGCCACTTCTTTGAGGGCCTGGATGCACGCAGGAACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453_CASSETTE4
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(5.3=44.7)
C2:
PF126982=ABC2_membrane_3=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAAAGCAAGAAGTGGGTGA
R:
TTGATGTTCCTGCGTGCATCC
Band lengths:
106-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]