BtaEX0001722 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45177257-45178107:+
Coord C1 exon
chr7:45177257-45177401
Coord A exon
chr7:45177495-45177618
Coord C2 exon
chr7:45177978-45178107
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTAATCTGCCCCTGAGCAGAAG
3' ss Score
3.46
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
CTGGTCGATCACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACAGCCTATGTTGTGCTCACCTGCATCAATCTCTTCATTGGTATCAATGGCAGCATGGCCACCTTCGTGCTTGAGCTCTTCTCTGATCAG
Seq A exon
AAGTTGCAGAAGGTGAGCCGGATCCTGAAACAGGTCTTCCTTATCTTTCCTCACTTCTGCTTGGGCCGGGGCCTCATCGACATGGTGCGGAACCAGGCCATGGCTGATGCCTTTGAGCGCTTGG
Seq C2 exon
GAGAGGGGTATTTCCAGTCGCCCCTGCGTTGGGAGGTGGTCGGCAAGAACCTCTTGGCCATGTTCATACAGGGGCCAATCTTCCTCCTCTTTACATTACTGCTTCAGCACCACAACCGCCTCCTACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.1=100)
A:
PF126982=ABC2_membrane_3=FE(12.9=100)
C2:
PF126982=ABC2_membrane_3=PD(10.4=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCTTCTCCGTGCCCAG
R:
TGTGGTAGGAGGCGGTTGTG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development