DreEX0000041 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5696956-5700036:+
Coord C1 exon
chr11:5696956-5697100
Coord A exon
chr11:5699702-5699825
Coord C2 exon
chr11:5699907-5700036
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATATCCATGTGGTGCTCAGCAT
3' ss Score
2.98
5' ss Seq
TTGGTATTT
5' ss Score
2.39
Exon sequences
Seq C1 exon
TTGGTCTATCACTCCGCTTATGTACCCAGCGTCCTTCATCTTCTCCGTGCCCAGTACTGCCTATGTGGTGCTCACCTCCATCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACATTTGTCCTGGAGCTCTTTGTTGATGAG
Seq A exon
CATTTGAACGAGGTCAACAGGATCCTGAAGAAGGTCTTTCTGATATTTCCTCACTTCTGTCTGGGTCGAGGTCTCATAGACATGGCTAAAAACCAGGCCATGGCAGACGCATTTCAGCGGCTTG
Seq C2 exon
GAACCAAACAGAATCTGGATCCTTTATCCTGGGATTTTGTTGGGAAGAACCTGTTTGCCATGGCGATGGAAGGGATTGTGTTCTTCCTCTTTACTGTTCTCCTGCAGTATAAGTTCTTTGTTAATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'37-39,'37-38,38-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.9=100)
A:
PF126982=ABC2_membrane_3=FE(11.0=100)
C2:
PF126982=ABC2_membrane_3=PD(8.8=75.0)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCGCTTATGTACCCAGC
R:
ACTGCAGGAGAACAGTAAAGAGG
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]