RnoEX0004745 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69869997-69873197:-
Coord C1 exon
chr5:69873053-69873197
Coord A exon
chr5:69871421-69871544
Coord C2 exon
chr5:69869997-69870126
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCTCATCTTCAGAAA
3' ss Score
10.54
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGGTCGATCACTCCTCTCATGTACCCAGCGTCCTTTGTGTTCAAGATCCCCAGCACTGCCTACGTGGTCCTCACCAGTGTGAACCTCTTCATCGGCATCAATGGTAGTGTGGCCACTTTCGTCCTGGAGCTCTTTACAAACAAT
Seq A exon
AAATTCAATGACATCAATGACATCCTGAAATCTGTGTTTCTTATTTTCCCACATTTTTGCCTGGGGCGAGGGCTTATTGACATGGTGAAAAACCAGGCGATGGCTGATGCCCTGGAGAGGTTTG
Seq C2 exon
GGGAGAACCGCTTCGTCTCTCCACTCTCTTGGGACTTAGTAGGACGGAACGAAAATGCCATGGCCGTGGAAGGGGTGGTGTTCTTCCTCGTTACGGTTCTAATCCAGTACCGATTTTTCATCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'53-52,'53-51,54-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.1=100)
A:
PF126982=ABC2_membrane_3=FE(7.8=100)
C2:
PF126982=ABC2_membrane_3=PD(6.3=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCAGCGTCCTTTGTGTT
R:
TGGGCCTGATGAAAAATCGGT
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]