DreEX6056955 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6193675-6195528:+
Coord C1 exon
chr14:6193675-6193819
Coord A exon
chr14:6193932-6194055
Coord C2 exon
chr14:6195399-6195528
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATCCTCTGATACAGGAA
3' ss Score
8.82
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATGGTCCATCACTCCTCTTATGTACCCAGCATCCTTCCTCTTTAAAATCCCCAGCACTGCTTATGTGGTTCTCACAAGCGTCAACATCCTCATTGGGATCAATGGCAGCATTTCAACATTTGTCATGGAGTTATTCGGAAATCAT
Seq A exon
GAAATTGGAGGAATTAATGACATCCTGAAGAACGTTTTGCTCATCTTCCCACATTTCTGCCTGGGTCGAGGTCTCATCGACATGGTGAAGAATCAGGCCATGGCTGACGCTCTGGAGAGATTTG
Seq C2 exon
GTGAGAACCGTTTCCGTTCTCCACTGGAGTGGGACATGGTGGGTAAGAATCTTTTCGCTATGGCTGTGGAGGGTGTGGTTTTCTTCATTATCACCGTCCTCATCCAGTACAGATTCTTCTTTGAACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.8=100)
A:
PF126982=ABC2_membrane_3=FE(12.6=100)
C2:
PF126982=ABC2_membrane_3=PD(10.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCCTCTTATGTACCCAGCA
R:
TGTACTGGATGAGGACGGTGA
Band lengths:
248-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]