GgaEX1005327 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54554557-54556765:-
Coord C1 exon
chrZ:54556621-54556765
Coord A exon
chrZ:54555257-54555380
Coord C2 exon
chrZ:54554557-54554686
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTTAATTTTGTCTTAACAGAAG
3' ss Score
8.01
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGGTCTATCACTCCTCTCATGTATCCAGCCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
Seq A exon
AAGCTGAACAACATCAATGACATCTTGAAGTCTGTCTTTCTTATCTTCCCTCACTTCTGCCTGGGGCGGGGTCTTATTGACATGGTGAAAAATCAGGCCATGGCTGATGCTCTGGAGAGGTTTG
Seq C2 exon
GTGAGAATCGTTTTGTGTCCCCTCTGTCATGGGACCTGGTGGGAAGGAACCTGTTTGCCATGGCAGTGGAGGGTGTGGTCTTCTTCCTCATTACTGTGCTCATCCAGTACAGATTCTTCATCAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX5-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.1=100)
A:
PF126982=ABC2_membrane_3=FE(11.2=100)
C2:
PF126982=ABC2_membrane_3=PD(9.0=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCATGTATCCAGCCTCCT
R:
TCTGTACTGGATGAGCACAGT
Band lengths:
245-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]