DreEX0009879 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51980158-51981721:+
Coord C1 exon
chr1:51980158-51980302
Coord A exon
chr1:51981054-51981177
Coord C2 exon
chr1:51981592-51981721
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCGTTGTTATTTCTTCCAGGAG
3' ss Score
9.28
5' ss Seq
TCGGTGCGT
5' ss Score
8.67
Exon sequences
Seq C1 exon
ATGGTCCATAACGCCCCTGATGTACCCAGCTTCATTCTTCTTCAAGATCCCAAGTACAGCATATGTGGTTCTGACCAGCGTCAACATCCTCATTGGGATAAACGGCAGCGTATCCACATTCGTCCTGGAGCTTTTCGGCAGCAAT
Seq A exon
GAGATCGGCGGCATCAATGACATCTTGAAGAACGTGTTTCTGATCTTCCCTCATTTCTGTCTGGGTCGAGGACTCATTGATATGGTGAAGAACCAAGCTATGGCTGACGCGCTGGAGCGATTCG
Seq C2 exon
GAGAGAATCGTTTCCGCTCTCCTCTGGCGTGGGACATGGTGGGCAAGAATCTGTTCGCTATGGCCATCGAGGGCGTGATTTTCTTCAGCATCACCGTCCTCATCCAGTACCGCTTCTGCATTAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'41-43,'41-41,42-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.4=100)
A:
PF126982=ABC2_membrane_3=FE(11.4=100)
C2:
PF126982=ABC2_membrane_3=PD(9.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACGCCCCTGATGTACCCA
R:
GGTACTGGATGAGGACGGTGA
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]