RnoEX6030635 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12745989-12746792:-
Coord C1 exon
chr7:12746648-12746792
Coord A exon
chr7:12746423-12746546
Coord C2 exon
chr7:12745989-12746118
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTTCTACCTACCCTGAACAGAAC
3' ss Score
6.12
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
CTGGTCTATTACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACGGCCTATGTGGTGCTCACCTGCATCAACCTCTTCATCGGCATCAACAGCAGCATGGCCACTTTCGTGCTGGAACTGCTTTCAGATCAG
Seq A exon
AACCTTCAAGAAGTGAGCCGGATCCTGAAGCAAGTGTTTCTTATCTTCCCCCACTTCTGCCTTGGCCGAGGGCTCATTGACATGGTGCGGAACCAGGCCATGGCAGATGCCTTTGAGCGCTTAG
Seq C2 exon
GAGACAAGCAATTCCAGTCGCCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGGTGGCCCAGGGGCCCCTGTTCCTCCTAATCACACTCCTGCTCCAACATCGCAACCGCCTCCTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'51-57,'51-56,53-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.6=100)
A:
PF126982=ABC2_membrane_3=FE(12.5=100)
C2:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCATGTACCCAGCCTCCT
R:
CGATGTTGGAGCAGGAGTGTG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]