BtaEX0002252 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18597175-18606855:+
Coord C1 exon
chr25:18597175-18597533
Coord A exon
chr25:18605584-18605853
Coord C2 exon
chr25:18606645-18606855
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTTGTCTTTTAGATG
3' ss Score
11.61
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CAGCAACTGCATGGACATTTTCCCTCTAATAAATACATTATTTTCCCATTCCTGCAAAAGCCTGTGGTGTGTGTAAATTATTAACTATAAAAGGGATAAGTAACCTCAGGGGACTGTGTAAACTTACAGTGTAAACTTAGCCCAGAACGTTTGCTCCTCCCTCCAGAATGTCTTCACCAATCCGAGCAAGACACTTCTGAGCATAATTTAACCTCTCCCAACTGTCAGGCTATTCTCTCTTCTTTTGGTTATTACCACCACCAAAGCAGATGCAAGAGTTCAAGTTTCAGGGATCCTCCTCTAGGAAATAAGTCTGCCGTCATCTGTCATCTCCAGCTGTGTCAGAATCTGTCACTTTA
Seq A exon
ATGGATTGGTATCTGTAGAAATTCGGGGTGCTAAAATACTTAGCCAGACTGACGTTAGCCCTTGTCACCATGAAGATATTACTTTGTGCCAAATATTTTCAGTGCCCAGTAATTCCTGGCTCTATGAGAGCATTGCATAAAGATTACAGAACAGTGACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTTAAACTAGAGATCCCAGAGTATTTCAACTTTGCCAAAGATGTCCTGGACCAATGGACCAGTATGGAAAAG
Seq C2 exon
GCTGGGAAGAAACCTTCCAATCCAGCCTTCTGGTGGACAAATGGAAATGGAGAAGAAGTGAGATGGAGTTTTGAGGAACTAGGATCTTTATCAAGGAAATTTGCAAATATACTTACAGAAGCCTGTGGCCTGCAAAGGGGAGATCGAGTAATTTTGCTTTTGCCCAGGATCCCTGAATGGTGGCTTGCAAATATAGCCTGTCTGCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=2.7)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACCACCAAAGCAGATGC
R:
CAAGCCACCATTCAGGGATCC
Band lengths:
294-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development