HsaEX6042621 @ hg38
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20763702-20775920:+
Coord C1 exon
chr16:20763702-20764125
Coord A exon
chr16:20769984-20770253
Coord C2 exon
chr16:20775839-20775920
Length
270 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTGCTTGTCTTTTAGATG
3' ss Score
10.86
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTTTCCTTTCAATTTCAAAACTCCTCTATGGCTTCCTCCATCTGTTCTTCCTTCTGAGAAGTGCTCTCTCTGCCCCTTTACAGAACTAACCACTTCGGCAACTCCTTGGACACTTTCCTTCTTGTTAATAATTTGCTTTCTCCGCCCCTCAAAAGCTTGCTGTTTCTGTAAATCATTACCTGTAAGAGGAACCGCTGGGAGTCCTGTAAACTTTAGCCCAGAGCTTGGCTCCTCCTCCAGAATGTCTCCACCAATCAAGGAAAGTGTTTTGGGCCAGTCTTGCTCCTCCGGATTGTCAGACTGCTCCTCCCTCTTCTTTAGACTGCCACGAGGAAAAAGCAGATGTGAGAACTCAAGGTTCAGGGCTGCTCTTCTAAGAAACAAGTCTGCCATAATCTCCATCTGTGTTGGAATCTGTTAACTA
Seq A exon
ATGAACTGGTCTCTGTGCAAATCCTGAGTGCTAAAGCTTCCAACAAGACTGATGCTAGCTCGTGTCACCAGGAAGATGCTACGTCATGCCAAGTGTTTTCAGCGCCTAGCAATTTTTGGTTCTGTGAGGGCACTGCATAAAGATAATAGAACAGCAACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTCAAACTGGGGATTCCAGAGTATTTCAACTTTGCTAAAGATGTCCTGGACCAATGGACTGATAAGGAAAAG
Seq C2 exon
GCTGGAAAGAAACCTTCAAATCCAGCCTTCTGGTGGATCAACAGAAATGGAGAAGAGATGCGATGGAGTTTTGAGGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'26-31,'26-29,32-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=2.7)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCTGGGAGTCCTGTAAA
R:
ACTCCATCGCATCTCTTCTCCA
Band lengths:
304-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains