HsaEX6042621 @ hg19
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20775312-20787371:+
Coord C1 exon
chr16:20775312-20775447
Coord A exon
chr16:20781306-20781575
Coord C2 exon
chr16:20787161-20787371
Length
270 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTGCTTGTCTTTTAGATG
3' ss Score
10.86
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CGGATTGTCAGACTGCTCCTCCCTCTTCTTTAGACTGCCACGAGGAAAAAGCAGATGTGAGAACTCAAGGTTCAGGGCTGCTCTTCTAAGAAACAAGTCTGCCATAATCTCCATCTGTGTTGGAATCTGTTAACTA
Seq A exon
ATGAACTGGTCTCTGTGCAAATCCTGAGTGCTAAAGCTTCCAACAAGACTGATGCTAGCTCGTGTCACCAGGAAGATGCTACGTCATGCCAAGTGTTTTCAGCGCCTAGCAATTTTTGGTTCTGTGAGGGCACTGCATAAAGATAATAGAACAGCAACCCCTCAGAATTTCTCCAACTATGAATCCATGAAACAGGACTTCAAACTGGGGATTCCAGAGTATTTCAACTTTGCTAAAGATGTCCTGGACCAATGGACTGATAAGGAAAAG
Seq C2 exon
GCTGGAAAGAAACCTTCAAATCCAGCCTTCTGGTGGATCAACAGAAATGGAGAAGAGATGCGATGGAGTTTTGAGGAACTGGGATCTCTGTCCAGAAAATTTGCCAATATACTTTCAGAAGCCTGTTCCCTACAAAGAGGAGATCGGGTAATTCTGATTCTGCCCAGGGTCCCAGAGTGGTGGCTTGCAAATGTGGCCTGTCTGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'0-4,'0-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=2.7)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACGAGGAAAAAGCAGA
R:
ACATTTGCAAGCCACCACTCT
Band lengths:
296-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)