RnoEX0006230 @ rn6
Exon Skipping
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189521311-189523382:+
Coord C1 exon
chr1:189521311-189521458
Coord A exon
chr1:189522384-189522561
Coord C2 exon
chr1:189523172-189523382
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCAATGTTACTTCGTGCTAGGTG
3' ss Score
6.89
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAAAAACAAGGAGGCTCAAGTGGAAAATCTAGAAGAGCTCAAGATCACTGACTTGTGAGCTTCTCACACAAGGAGGTGGACACCAGGAGCGCCTGGGTTTCAAATGCATCCAGTTCATCAACACGATGCCTAACCACCAAATCCAT
Seq A exon
GTGTTTTCACCGCCTAGCAATCCCTGATCCCAGGAGAATCTTGTATAAAGATTACAGAACAGCGATTCCTCAGAACTTTTCCAACTATGAGTCCATGAAACATGACTTCAAAATAGAGATTCCAGAGTATTTCAATTTTGCAAAAGATGTTTTGGACCAATGGACCAATACGGAAAAG
Seq C2 exon
ACTGGAAAAAGACTTTCCAATCCAGCCTTCTGGTGGGTAGATGGAAATGGAAAGGAGGTGAGATGGAGTTTTGAAGAACTTGGGTCTTTATCCAGGAAATTTGCCAACATACTCACAGAAGCCTGTTCCCTGCAAAGAGGAGATAGAGTAATGGTGATTCTGCCCAAGATCCCAGAGTGGTGGCTTGCAAATGTAGCCTGTCTGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246-'2-3,'2-2,3-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.0)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGGTTTCAAATGCATC
R:
AAGCCACCACTCTGGGATCTT
Band lengths:
243-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]