MmuEX6013616 @ mm10
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:119766891-119768974:+
Coord C1 exon
chr7:119766891-119767038
Coord A exon
chr7:119767873-119768146
Coord C2 exon
chr7:119768764-119768974
Length
274 bp
Sequences
Splice sites
3' ss Seq
CATTTTTACCTGTCTTTTAGCTG
3' ss Score
8.84
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAAAGACAAGGAGGTTCAAGCTGGATGATCTCAGAGAGTTCAAGATCACCGACTCGTGAGGTTCTCACACAGGAAGTGGACACCTGGAGCCGCTGGATTTCAAATGCATCCATTTCATCAGCATGATGCCTAGCCACCAGATCCAT
Seq A exon
CTGGATTAGTCTGCATGGAAATCTCACATGCCAAAACATTCAACAACACTGATGCTAGCTAGCTCTTGTCATCATGGTGATGTTACTCCGTGCTAGGTGTTTTCAGCGCCTAGCAATTCCTGATCCTATGAGAGTCTTGTATAAAGATTACAGAACAGCGACCCCTCAGAACTTTTCCAACTATGAGTCCATGAAACAAGACTTCAAAATAGAGATTCCAGAGTATTTCAATTTTGCAAAAGATGTCCTGGACCAATGGACCAATATGGAAAAG
Seq C2 exon
GCTGGAAAGAGACTTTCCAATCCAGCCTTCTGGTGGATAGATGGGAATGGAGAAGAGCTGAGATGGAGTTTTGAAGAACTTGGGTTGTTATCCAGGAAATTTGCCAACATACTCACAGAAGCCTGCTCCCTGCAAAGAGGAGACAGAGTAATGGTGATACTGCCCAAGATCCCAGAGTGGTGGCTTGCAAATGTGGCCTGTCTGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(0.5=3.0)
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCGACTCGTGAGGTTCT
R:
ACATTTGCAAGCCACCACTCT
Band lengths:
296-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types