BtaEX0002256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18227011-18231338:+
Coord C1 exon
chr25:18227011-18227091
Coord A exon
chr25:18227230-18227331
Coord C2 exon
chr25:18231211-18231338
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGATCTCTCTGCCAGGTT
3' ss Score
9.99
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGTAATCTGTGCCAATCCAAAAGGGATGAAAATCAAGTCAGGATCCATGGGGAAAGCGTCCCCACCATATGATGTGCAG
Seq A exon
GTTGTAGATGAGGAGGGCAATATCTTACCTCCTGGAGAAGAAGGGAATGTTGCCATCCGTGTCAGACCCACCAGACCCTTCTGTTTCTTCACTTGCTATTTG
Seq C2 exon
GACAACCCTGAGAAGACAGCAGCATCAGAACGAGGGGACTTCTACATCACAGGGGACCGAGCCCACATGGATAAGGATGGCTACTTTTGGTTCATGGGAAGAAATGATGACGTGATCAATTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.353 C2=0.163
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGCCAATCCAAAAGGG
R:
TTGAGGAATTGATCACGTCATCA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development