RnoEX0006243 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189259908-189262409:+
Coord C1 exon
chr1:189259908-189259988
Coord A exon
chr1:189260109-189260210
Coord C2 exon
chr1:189262282-189262409
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTATGACCTCTCTGTTAGATT
3' ss Score
6.53
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCCTCATCTGTGGCAATTTTAGAGGCTCAACGATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
Seq A exon
ATTGTAGACGAGGAGGGTAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCCATCCGCATCAAACCTACTAGACCCTTCTGTCTCTTCAACTGCTATCTG
Seq C2 exon
GACAATCCTGAGAAGACAGCAGCATCAGAGCAAGGAGACTTTTACATCACTGGGGACCGAGCACATATGGACGAGGACGGCTACTTTTGGTTCGTGGGGAGAAATGATGATGTAATCAACTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.127 C2=0.124
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCATCTGTGGCAATTTTAGA
R:
AGTTGATTACATCATCATTTCTCCCC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]