MmuEX6013565 @ mm9
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:126681599-126684246:+
Coord C1 exon
chr7:126681599-126681679
Coord A exon
chr7:126681802-126681903
Coord C2 exon
chr7:126684119-126684246
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTATGACCCCCCCTTTCAGATT
3' ss Score
8.78
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTGTCATCTGTGGCAATTCAAGAAACTCGACAATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
Seq A exon
ATTGTAGATGAGGAGGGCAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCTGTCCGAATCAAGCCTACTAGACCCTTCTGTTTCTTCAACTGCTATCTG
Seq C2 exon
GACAATCCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTTTACATCACTGGGGACAGAGCACATATGGACGAGGATGGCTACTTTTGGTTCTTGGGGAGAAATGATGATGTAATCAACTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.206 C2=0.186
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATCTGTGGCAATTCAAGA
R:
GAGTTGATTACATCATCATTTCTCCC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: