BtaEX0002284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81054314-81067014:-
Coord C1 exon
chr10:81066900-81067014
Coord A exon
chr10:81062522-81062641
Coord C2 exon
chr10:81054314-81054400
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTCCATCTGTTCAGGTG
3' ss Score
10.83
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACGTTTACAGCATGGTGCAACTCCCACCTCCGGAAGGCAGGAACACAGATCGAGAACATCGAGGAGGACTTCCGGGACGGCCTGAAGCTGATGCTACTGCTGGAGGTCATCTCAG
Seq A exon
GTGAACGTTTGGCCAAGCCCGAGAGAGGCAAAATGAGGGTGCACAAGATCTCCAATGTCAACAAGGCCCTGGACTTCATAGCCAGCAAGGGGGTCAAGCTGGTGTCCATAGGAGCTGAAG
Seq C2 exon
AAATCGTGGATGGGAATGTGAAAATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(37.3=100)
A:
PF0030726=CH=FE(39.2=100)
C2:
PF0030726=CH=PD(20.6=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAACTCCCACCTCCG
R:
TCCACAGAGATGTCCTGGATGG
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development