RnoEX0006323 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103407558-103418098:-
Coord C1 exon
chr6:103417984-103418098
Coord A exon
chr6:103413787-103413906
Coord C2 exon
chr6:103407558-103407644
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCCTCTTCACCAGGTG
3' ss Score
11.9
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACCTTCACGGCCTGGTGCAACTCCCACCTGCGCAAAGCAGGGACCCAGATTGAGAACATTGAAGAGGACTTCCGAGATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATCTCAG
Seq A exon
GTGAGCGTTTGGCCAAGCCAGAGAGAGGCAAGATGCGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATTGGAGCTGAAG
Seq C2 exon
AAATTGTGGACGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTTCGTTTTGCCATCCAAGACATCTCTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'10-5,'10-3,13-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(37.3=100)
A:
PF0030726=CH=FE(39.2=100)
C2:
PF0030726=CH=PD(20.6=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCACGGCCTGGTGC
R:
CTTCCACAGAGATGTCTTGGATGG
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]