GgaEX1006129 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27528348-27540069:+
Coord C1 exon
chr5:27528348-27528462
Coord A exon
chr5:27532896-27533015
Coord C2 exon
chr5:27539983-27540069
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTTTCTTCCTAGGTG
3' ss Score
13.02
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACATTTACAGCATGGTGTAATTCTCACCTCCGCAAGGCTGGGACACAGATTGAGAACATAGAGGAAGATTTCAGGGATGGTCTTAAACTCATGTTACTTCTGGAAGTCATTTCAG
Seq A exon
GTGAACGTTTGGCTAAGCCCGAAAGAGGCAAAATGCGAGTGCACAAAATATCCAACGTGAACAAGGCCTTGGATTTCATTGCCAGCAAAGGAGTCAAACTAGTATCAATTGGAGCAGAAG
Seq C2 exon
AAATTGTGGATGGCAACGTTAAAATGACTCTTGGAATGATCTGGACCATCATCCTTCGTTTTGCCATTCAGGATATCTCAGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(37.3=100)
A:
PF0030726=CH=FE(39.2=100)
C2:
PF0030726=CH=PD(20.6=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTACAGCATGGTGTAATTCTCA
R:
CTTCAACTGAGATATCCTGAATGGCA
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]