DreEX0010928 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36228930-36236603:-
Coord C1 exon
chr13:36236489-36236603
Coord A exon
chr13:36232509-36232628
Coord C2 exon
chr13:36228930-36229016
Length
120 bp
Sequences
Splice sites
3' ss Seq
TAAACCGATTCTCTCTGCAGGAG
3' ss Score
9.58
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACGTTTACTGCCTGGTGCAATTCTCATCTACGGAAGGCGGGTACACAAATTGAAAACATAGAGGAGGATTTTAGAGACGGACTCAAACTCATGCTGCTCCTAGAGGTCATCTCAG
Seq A exon
GAGAACGCCTGGCCAAACCAGAGAGAGGAAAAATGAGAGTCCACAAGATCTCCAATGTGAATAAAGCTCTGGGCTTCATCGCCAGCAAAGGAGTCAAACTGGTTTCTATTGGAGCAGAGG
Seq C2 exon
AGATTGTTGATGGAAATGCTAAGATGACTCTCGGGATGATCTGGACCATTATCCTTCGCTTCGCCATCCAGGACATCTCAGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(37.3=100)
A:
PF0030726=CH=FE(39.2=100)
C2:
PF0030726=CH=PD(20.6=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTACTGCCTGGTGC
R:
CCTCCACTGAGATGTCCTGGA
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]