MmuEX6081840 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80198981-80209473:-
Coord C1 exon
chr12:80209359-80209473
Coord A exon
chr12:80204962-80205081
Coord C2 exon
chr12:80198981-80199067
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTCCTCTTCATCAGGTG
3' ss Score
11.08
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACGTTCACAGCCTGGTGCAACTCCCACCTGCGCAAAGCGGGGACACAGATCGAGAACATCGAAGAGGACTTCCGAGATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATCTCAG
Seq A exon
GTGAACGCTTGGCCAAGCCAGAGAGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAAGGCCTTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATCGGAGCTGAAG
Seq C2 exon
AAATTGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCCGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'37-5,'37-4,39-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(37.3=100)
A:
PF0030726=CH=FE(39.2=100)
C2:
PF0030726=CH=PD(20.6=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTCACAGCCTGGTGCAA
R:
CTTCCACGGAGATGTCCTGGA
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types